miRBase entry: dre-mir-30b

Stem-loop dre-mir-30b

Accession

MI0001941

Description

Danio rerio dre-mir-30b precursor miRNA

Literature search

11 open access papers mention dre-mir-30b
(118 sentences)

Sequence

7303 reads, 512 reads per million, 11 experiments

uuccaguguagucgcUGUAAACAUCCUACACUCAGCUgugagcugcagacgaggcugggcggaggguguuugcugugacugucuggag
.(((((..(((((((.(((((((((((.(.(((((((.((.........)).))))))).).))))))))))).))))))).))))).

Structure

u     ug       U           A A       g  agc 
 uccag  uagucgc GUAAACAUCCU C CUCAGCU ug   u
 |||||  ||||||| ||||||||||| | ||||||| ||   g
 agguc  gucagug cguuuguggga g gggucgg gc   c
g     -u       u           g c       a  aga

Annotation confidence High

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Genome context

chr16: 25341724-25341811 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-30b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-30b

Accession	MIMAT0001804
Description	Danio rerio dre-miR-30b mature miRNA
Sequence	16 - UGUAAACAUCCUACACUCAGCU - 37
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293