miRBase entry: dre-mir-30c

Stem-loop dre-mir-30c

Accession

MI0001944

Description

Danio rerio dre-mir-30c precursor miRNA

Literature search

12 open access papers mention dre-mir-30c
(133 sentences)

Sequence

19121 reads, 1064 reads per million, 11 experiments

cuucagggagUGUAAACAUCCUACACUCUCAGcuggagcgcagccgaggCCGGGAGUGGGAUGUUUGCGCUcucuggcu
..((((((((((((((((((((((.(((((.((((.....)))).)))...))..))))))))))))))))))))))..

Structure

cu                      -A  ---   A    g 
  ucagggagUGUAAACAUCCUAC  CU   CUC Gcug a
  ||||||||||||||||||||||  ||   ||| |||| g
  ggucucUCGCGUUUGUAGGGUG  GG   gag cgac c
uc                      AG  CCg   c    g

Annotation confidence High

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Genome context

chr13: 27804067-27804145 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-30c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-30c-5p

Accession	MIMAT0001805
Description	Danio rerio dre-miR-30c-5p mature miRNA
Sequence	11 - UGUAAACAUCCUACACUCUCAG - 32
Evidence	experimental cloned [1]
Database links
Predicted targets

Mature dre-miR-30c-3p

Accession	MIMAT0031952
Description	Danio rerio dre-miR-30c-3p mature miRNA
Sequence	50 - CCGGGAGUGGGAUGUUUGCGCU - 71
Evidence	not_experimental
Database links

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293