Stem-loop dre-mir-92a-1

Accession

MI0001951

Description

Danio rerio dre-mir-92a-1 precursor miRNA

Literature search

9 open access papers mention dre-mir-92a-1
(32 sentences)

Sequence

112168 reads, 6938 reads per million, 11 experiments

uggucccuuucugcgcAGGUUGGGAUUGGUAGCAAUGCUguguguuuugaaggUAUUGCACUUGUCCCGGCCUGUaaaggauugu
.....(((((....((((((((((((.(((.((((((((............))))))))))).))))))))))))))))).....

Structure

ugguc     cugc            U   A        gugug 
     ccuuu    gcAGGUUGGGAU GGU GCAAUGCU     u
     |||||    |||||||||||| ||| ||||||||      
     ggaaa    UGUCCGGCCCUG UCA CGUUAUgg     u
uguua     ----            U   -        aaguu 

Annotation confidence High

Genome context

chr1: 3297367-3297451 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from dre-mir-92a-1

Mature dre-miR-92a-3p

• Accession: MIMAT0001808
• Description: Danio rerio dre-miR-92a-3p mature miRNA
• Sequence: 54 - UAUUGCACUUGUCCCGGCCUGU - 75
• Evidence: experimental ; cloned [1]

Mature dre-miR-92a-5p

• Accession: MIMAT0031953
• Description: Danio rerio dre-miR-92a-5p mature miRNA
• Sequence: 17 - AGGUUGGGAUUGGUAGCAAUGCU - 39
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293