Stem-loop dre-mir-96

Accession

MI0001955

Description

Danio rerio dre-mir-96 precursor miRNA mir-96

Gene
family

RF00669; mir-96

Literature search

7 open access papers mention dre-mir-96
(74 sentences)

Sequence

774 reads, 32 reads per million, 11 experiments

gcugggcgcucuucuuugccuguUUUGGCACUAGCACAUUUUUGCUuuuuuauauauaccuugagCAAUUAUGUGUAGUGCCAAUAUgggacaagacagacaugcuacuuaaaaaaaaaaucagc
((((((((.(((((((..(((((.(((((((((.(((((..((((((...............))))))..)))))))))))))).)))))..)))).)))..))))...............))))

Structure

    ---------------    -c   -    ug     U         G     UU      uuuuau 
gcug               ggcg  ucu ucuu  ccugu UUGGCACUA CACAU  UUGCUu      a
||||               ||||  ||| ||||  ||||| ||||||||| |||||  ||||||      u
cgac               ucgu  aga agaa  gggUA AACCGUGAU GUGUA  AACgag      a
    uaaaaaaaaaauuca    ac   c    ca     U         -     UU      uuccau 

Annotation confidence High

Genome context

chr4: 15074715-15074839 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-96

Mature dre-miR-96-5p

• Accession: MIMAT0001811
• Description: Danio rerio dre-miR-96-5p mature miRNA
• Sequence: 24 - UUUGGCACUAGCACAUUUUUGCU - 46
• Evidence: experimental ; cloned [1]

Mature dre-miR-96-3p

• Accession: MIMAT0031956
• Description: Danio rerio dre-miR-96-3p mature miRNA
• Sequence: 66 - CAAUUAUGUGUAGUGCCAAUAU - 87
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293