Stem-loop dre-mir-99-1

Accession

MI0001956

Description

Danio rerio dre-mir-99-1 precursor miRNA

Literature search

2 open access papers mention dre-mir-99-1
(4 sentences)

Sequence

8001 reads, 828 reads per million, 11 experiments

gccacuugucauuAACCCGUAGAUCCGAUCUUGUGauaaguuugauggcacaagcucgauucuaugggucucugucucuguggu
(((((..(.((...(((((((((..(((.((((((.............)))))).)))..)))))))))...)).)...)))))

Structure

     -uu u  uuA         UC   U      auaag 
gccac   g ca   ACCCGUAGA  CGA CUUGUG     u
|||||   | ||   |||||||||  ||| ||||||     u
uggug   c gu   uggguaucu  gcu gaacac     u
     ucu u  cuc         ua   c      gguag 

Annotation confidence High

Genome context

chr15: 29795583-29795666 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-99-1

Mature dre-miR-99

• Accession: MIMAT0001812
• Description: Danio rerio dre-miR-99 mature miRNA
• Sequence: 14 - AACCCGUAGAUCCGAUCUUGUG - 35
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293