Stem-loop dre-mir-99-2

Accession

MI0001957

Description

Danio rerio dre-mir-99-2 precursor miRNA

Literature search

2 open access papers mention dre-mir-99-2
(4 sentences)

Sequence

3984598 reads, 7661.0 reads per million, 289 experiments

cacuugucacaAACCCGUAGAUCCGAUCUUGUGgcguaaucggcaaccCAAGCUCGAUUCUGUGGGUCUcugucacugug
(((..((.(((.(((((((((..(((.((((((.((....)).))...)))).)))..)))))))))...))).)).)))

Structure

   uu  c   --A         UC   U    ---  g  u 
cac  gu aca   ACCCGUAGA  CGA CUUG   UG cg a
|||  || |||   |||||||||  ||| ||||   || ||  
gug  ca ugu   UGGGUGUCU  GCU GAAC   ac gc a
   -u  c   cUC         UA   C    cca  g  u 

Annotation confidence High

Genome context

chr10: 38074312-38074391 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-99-2

Mature dre-miR-99-5p

• Accession: MIMAT0001812
• Description: Danio rerio dre-miR-99-5p mature miRNA
• Sequence: 12 - AACCCGUAGAUCCGAUCUUGUG - 33
• Evidence: experimental ; cloned [1]

Mature dre-miR-99-2-3p

• Accession: MIMAT0060883
• Description: Danio rerio dre-miR-99-2-3p mature miRNA
• Sequence: 49 - CAAGCUCGAUUCUGUGGGUCU - 69
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293