Stem-loop dre-mir-125b-1

Accession

MI0001975

Description

Danio rerio dre-mir-125b-1 precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

24 open access papers mention dre-mir-125b-1
(190 sentences)

Sequence

11647 reads, 950 reads per million, 11 experiments

uucuguugcagguuggcgguuggucugcaaaugugccucucacaaUCCCUGAGACCCUAACUUGUGAcguuuuccuguuaugugcACGGGUUAGGUUCUUGGGAGCUgagaggggugcucugucaucagcccgccggcgucggaa
.((((....(.(((((((((((((..(((...(((((((((.((.((((.((((.(((((((((((((((.........)))).))))))))))).))))))))..)).)))))))))..))).))))).)))))))).))))).

Structure

u    uugc g        -     cu   aau         a  -a    U    C           -    uuu 
 ucug    a guuggcgg uuggu  gca   gugccucuc ca  UCCC GAGA CCUAACUUGUG Acgu   c
 ||||    | |||||||| |||||  |||   ||||||||| ||  |||| |||| ||||||||||| ||||   c
 aggc    u cggccgcc gacua  ugu   cguggggag gU  AGGG UUCU GGAUUGGGCAc ugua   u
a    ---- g        c     -c   -cu         a  CG    -    U           g    uug 

Annotation confidence High

Genome context

chr15: 21447656-21447800 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-125b-1

Mature dre-miR-125b-5p

• Accession: MIMAT0001821
• Description: Danio rerio dre-miR-125b-5p mature miRNA
• Sequence: 46 - UCCCUGAGACCCUAACUUGUGA - 67
• Evidence: experimental ; cloned [1]

Mature dre-miR-125b-1-3p

• Accession: MIMAT0031963
• Description: Danio rerio dre-miR-125b-1-3p mature miRNA
• Sequence: 86 - ACGGGUUAGGUUCUUGGGAGCU - 107
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293