miRBase entry: dre-mir-130c-2

Stem-loop dre-mir-130c-2

Accession

MI0001988

Description

Danio rerio dre-mir-130c-2 precursor miRNA

Literature search

5 open access papers mention dre-mir-130c-2
(12 sentences)

Sequence

31650 reads, 1125 reads per million, 11 experiments

uuguugaccaggGCCCUUUUUCUGUUGUACUACUgugcagucagaugagCAGUGCAAUAUUAAAAGGGCAUuggcugacaa
.(((((.((((.((((((((..((((((...(((((.((......)).)))))))))))..)))))))).)))).))))).

Structure

u     a    g        UC      ACU     g  gu 
 uguug ccag GCCCUUUU  UGUUGU   ACUgu ca  c
 ||||| |||| ||||||||  ||||||   ||||| ||   
 acagu gguU CGGGAAAA  AUAACG   UGACg gu  a
a     c    A        UU      ---     a  ag

Annotation confidence High

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Genome context

chr5: 13288828-13288908 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-130c-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-130c-3p

Accession	MIMAT0001828
Description	Danio rerio dre-miR-130c-3p mature miRNA
Sequence	50 - CAGUGCAAUAUUAAAAGGGCAU - 71
Evidence	experimental cloned [1]
Database links
Predicted targets

Mature dre-miR-130c-5p

Accession	MIMAT0031969
Description	Danio rerio dre-miR-130c-5p mature miRNA
Sequence	13 - GCCCUUUUUCUGUUGUACUACU - 34
Evidence	not_experimental

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293