Stem-loop dre-mir-132-1

Accession

MI0001989

Description

Danio rerio dre-mir-132-1 precursor miRNA

Literature search

9 open access papers mention dre-mir-132-1
(150 sentences)

Sequence

105 reads, 8 reads per million, 9 experiments

gucuccauggcgACCGUGGCAUUAGAUUGUUACUguaggaacagaauuuuuggUAACAGUCUACAGCCAUGGUCGcuagugggca
((((.(.(((((((((((((..(((((((((((((.((((......)))))))))))))))))..)))))))))))))).)))).

Structure

-    c a             AU             u    ac 
 gucu c uggcgACCGUGGC  UAGAUUGUUACUg agga  a
 |||| | |||||||||||||  ||||||||||||| ||||   
 cggg g aucGCUGGUACCG  AUCUGACAAUggu uuuu  g
a    u -             AC             -    aa 

Annotation confidence High

Genome context

chr15: 25897715-25897799 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-132-1

Mature dre-miR-132-5p

• Accession: MIMAT0003403
• Description: Danio rerio dre-miR-132-5p mature miRNA
• Sequence: 13 - ACCGUGGCAUUAGAUUGUUACU - 34
• Evidence: experimental ; cloned [1]

Mature dre-miR-132-3p

• Accession: MIMAT0001829
• Description: Danio rerio dre-miR-132-3p mature miRNA
• Sequence: 54 - UAACAGUCUACAGCCAUGGUCG - 75
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293