Stem-loop dre-mir-138-1

Accession

MI0002002

Description

Danio rerio dre-mir-138-1 precursor miRNA

Literature search

4 open access papers mention dre-mir-138-1
(9 sentences)

Sequence

6986 reads, 239 reads per million, 11 experiments

ugugugcugcAGCUGGUGUUGUGAAUCAGGCCGaugucacacgucagcgauaacccgGCUAUUUCACAACACCAGGGUggcaccaca
((((((((((..(((((((((((((...(((((.((((.(......).))))...)))))..))))))))))))).)))))).))))

Structure

    -      AG             UCA     --a    a ac 
ugug ugcugc  CUGGUGUUGUGAA   GGCCG   uguc c  g
|||| ||||||  |||||||||||||   |||||   |||| |   
acac acggUG  GACCACAACACUU   UCGgc   auag g  u
    c      -G             -UA     cca    c ac 

Annotation confidence High

Genome context

chr18: 17580159-17580245 [+]

Mature dre-miR-138-5p

• Accession: MIMAT0001835
• Description: Danio rerio dre-miR-138-5p mature miRNA
• Sequence: 11 - AGCUGGUGUUGUGAAUCAGGCCG - 33
• Evidence: experimental ; cloned [1]

Mature dre-miR-138-3p

• Accession: MIMAT0031973
• Description: Danio rerio dre-miR-138-3p mature miRNA
• Sequence: 58 - GCUAUUUCACAACACCAGGGU - 78
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293