Accession
MI0002007
Description
Danio rerio
dre-mir-143 precursor miRNA
Literature search
7 open access papers mention dre-mir-143
(17 sentences)
(17 sentences)
Sequence
32255
reads,
2013
reads per million, 11 experiments
gaucuacagucgucuggcccgcggugcagugcugcaucucuggucaacugggagucUGAGAUGAAGCACUGUAGCUCgggaggacaacacugucagcuc
((.(((((((.((((..((((.(.(((((((((.((((((.((((......)).)).)))))).))))))))).).)))).))))...))))).)).))
((.(((((((.((((..((((.(.(((((((((.((((((.((((......)).)).)))))).))))))))).).)))).))))...))))).)).))
Structure
u - --c gg c g g u - aa ga cu acagu gucu cccg g ugcagugcu caucuc gg uc c || || ||||| |||| |||| | ||||||||| |||||| || || cu ga uguca cagg gggC C AUGUCACGA GUAGAG cu ag u c c caa -a U G A U g gg
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
The cloned mature miR-143 sequence always appears to be 22nt in length, modified by the addition of a 3' U residue not found in the genomic sequence [1].
Genome context
chr14: 38742313-38742411 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-143
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature dre-miR-143
| Accession | MIMAT0001840 |
| Description | Danio rerio dre-miR-143 mature miRNA |
| Sequence | 57 - UGAGAUGAAGCACUGUAGCUC - 77 |
| Evidence |
experimental
cloned [1] |
References
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