Stem-loop dre-mir-144

Accession

MI0002009

Description

Danio rerio dre-mir-144 precursor miRNA mir-144

Gene
family

RF00682; mir-144

Literature search

39 open access papers mention dre-mir-144
(137 sentences)

Sequence

544730 reads, 989.0 reads per million, 276 experiments

gcucucuagacaGGAUAUCAUCGUAUACUGUAAGUUcauuauugagacaCUACAGUAUAGAUGAUGUACUAuccagggggucaacgagc
(((((((.((.((.((((((((.(((((((((..((((....))))....))))))))))))))))).)).)).)))))))........

Structure

--------       a  c  G        G         --AG    u 
        gcucucu ga aG AUAUCAUC UAUACUGUA    UUca u
        ||||||| || || |||||||| |||||||||    ||||  
        uggggga cu UC UGUAGUAG AUAUGACAU    gagu a
cgagcaac       c  A  A        -         Caca    u 

Annotation confidence High

Genome context

chr5: 42272074-42272162 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-144

Mature dre-miR-144-5p

• Accession: MIMAT0031975
• Description: Danio rerio dre-miR-144-5p mature miRNA
• Sequence: 13 - GGAUAUCAUCGUAUACUGUAAGUU - 36
• Evidence: not_experimental

Mature dre-miR-144-3p

• Accession: MIMAT0001841
• Description: Danio rerio dre-miR-144-3p mature miRNA
• Sequence: 50 - CUACAGUAUAGAUGAUGUACUA - 71
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293