Stem-loop dre-mir-146a

Accession

MI0002012

Description

Danio rerio dre-mir-146a precursor miRNA

Literature search

88 open access papers mention dre-mir-146a
(360 sentences)

Sequence

35102751 reads, 16469.0 reads per million, 287 experiments

gaguuuguuuugagcacuuuucccUGAGAACUGAAUUCCAUAGAUGGuguucaugaaaaguucAUCUAUGGGCUCAGUUCUUCUGgcaaucuguuuaaugucugcuacaaauuc
((((((((.(((((((..((.((..(((((((((..(((((((((((..............))))))))))).)))))))))..)).))..)))))))........))))))))

Structure

        -------u       cu  u  cU         AU           uguuca 
gaguuugu        uugagca  uu cc  GAGAACUGA  UCCAUAGAUGG      u
||||||||        |||||||  || ||  |||||||||  |||||||||||       
cuuaaaca        aauuugu  aa gG  UUCUUGACU  GGGUAUCUAcu      g
        ucgucugu       cu  c  UC         -C           ugaaaa 

Annotation confidence High

Genome context

chr13: 11822170-11822283 [+]

Mature dre-miR-146a-5p

• Accession: MIMAT0001843
• Description: Danio rerio dre-miR-146a-5p mature miRNA
• Sequence: 25 - UGAGAACUGAAUUCCAUAGAUGG - 47
• Evidence: experimental ; cloned [1]

Mature dre-miR-146a-3p

• Accession: MIMAT0060891
• Description: Danio rerio dre-miR-146a-3p mature miRNA
• Sequence: 64 - AUCUAUGGGCUCAGUUCUUCUG - 85
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293