Stem-loop dre-mir-146b

Accession

MI0002013

Description

Danio rerio dre-mir-146b precursor miRNA

Literature search

33 open access papers mention dre-mir-146b
(237 sentences)

Sequence

605469 reads, 2189.0 reads per million, 285 experiments

gcucuuggcuuUGAGAACUGAAUUCCAAGGGUGUcugcuuuauauucagCCCACGGAGUUCAGUUCUUAAguuuggaugc
(((((.(((((.((((((((((((((..((((................))))..))))))))))))))))))).))).))

Structure

  -   u     U              AA    GUcugcu 
gc ucu ggcuu GAGAACUGAAUUCC  GGGU       u
|| ||| ||||| ||||||||||||||  ||||        
cg agg uugAA UUCUUGACUUGAGG  CCCg       u
  u   u     -              CA    acuuaua 

Annotation confidence High

Genome context

chr21: 41639979-41640058 [+]

Mature dre-miR-146b-5p

• Accession: MIMAT0001844
• Description: Danio rerio dre-miR-146b-5p mature miRNA
• Sequence: 12 - UGAGAACUGAAUUCCAAGGGUGU - 34
• Evidence: experimental ; cloned [1]

Mature dre-miR-146b-3p

• Accession: MIMAT0060892
• Description: Danio rerio dre-miR-146b-3p mature miRNA
• Sequence: 50 - CCCACGGAGUUCAGUUCUUAA - 70
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293