Stem-loop dre-mir-148

Accession

MI0002015

Description

Danio rerio dre-mir-148 precursor miRNA mir-148

Gene
family

RF00248; mir-148

Literature search

10 open access papers mention dre-mir-148
(12 sentences)

Sequence

1614094 reads, 1972.0 reads per million, 274 experiments

cuuuccaaguaAAGUUCUGUGAUACACUCCGAcucugaauguuugcagUCAGUGCAUUACAGAACUUUGUuuugggagu
.((((((((.(((((((((((((.((((..(((((.........).)))))))).)))))))))))))..)))))))).

Structure

c        -u             A    CC    - uga 
 uuuccaag  aAAGUUCUGUGAU CACU  GAcu c   a
 ||||||||  ||||||||||||| ||||  |||| |   u
 gaggguuu  UUUCAAGACAUUA GUGA  CUga g   g
u        UG             C    --    c uuu 

Annotation confidence High

Genome context

chr9: 1644683-1644761 [-]

Mature dre-miR-148-5p

• Accession: MIMAT0060893
• Description: Danio rerio dre-miR-148-5p mature miRNA
• Sequence: 12 - AAGUUCUGUGAUACACUCCGA - 32
• Evidence: experimental ; cloned [1]

Mature dre-miR-148-3p

• Accession: MIMAT0001845
• Description: Danio rerio dre-miR-148-3p mature miRNA
• Sequence: 49 - UCAGUGCAUUACAGAACUUUGU - 70
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293