miRBase entry: dre-mir-181c

Stem-loop dre-mir-181c

Accession

MI0002024

Description

Danio rerio dre-mir-181c precursor miRNA

Literature search

9 open access papers mention dre-mir-181c
(31 sentences)

Sequence

5193 reads, 305 reads per million, 11 experiments

ggguccugauuCACAUUCAUUGCUGUCGGUGGGuuuuaucucuucgaCUCGCCGGACAAUGAAUGAGAAcuacggcuc
(((((.((.(((.(((((((((...((((((((((..........)))))))))).))))))))).))).)).)))))

Structure

     c  a   A         CUG          uuau 
ggguc ug uuC CAUUCAUUG   UCGGUGGGuu    c
||||| || ||| |||||||||   ||||||||||     
cucgg au AAG GUAAGUAAC   GGCCGCUCag    u
     c  c   A         --A          cuuc

Annotation confidence High

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Genome context

chr3: 34197694-34197771 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-181c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-181c-5p

Accession	MIMAT0001852
Description	Danio rerio dre-miR-181c-5p mature miRNA
Sequence	12 - CACAUUCAUUGCUGUCGGUGGG - 33
Evidence	experimental cloned [1]
Database links
Predicted targets

Mature dre-miR-181c-3p

Accession	MIMAT0031980
Description	Danio rerio dre-miR-181c-3p mature miRNA
Sequence	48 - CUCGCCGGACAAUGAAUGAGAA - 69
Evidence	not_experimental
Database links

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293