Stem-loop dre-mir-190a

Accession

MI0002027

Description

Danio rerio dre-mir-190a precursor miRNA

Literature search

3 open access papers mention dre-mir-190a
(4 sentences)

Sequence

43888 reads, 39.0 reads per million, 253 experiments

ucuggaggugagguagaccuggaagccuuucugcaggccucuguuUGAUAUGUUUGAUAUAUUAGGUUguuauucuguccaACUAUAUAUCAAACAUAUUCCUacaguguccugcucugucuccag
.(((((((.(((((..........))))).).(((((.(.((((..((((((((((((((((..(((((..........)))))))))))))))))))))...)))).).))))).....))))))

Structure

u      gugagguagaccuggaagccuuucu     c u    -uU                UA     uuau 
 cuggag                         gcagg c cugu   GAUAUGUUUGAUAUAU  GGUUg    u
 ||||||                         ||||| | ||||   ||||||||||||||||  |||||     
 gaccuc                         cgucc g gaca   UUAUACAAACUAUAUA  UCAac    c
-      --------------------ugucu     u u    UCC                --     cugu 

Annotation confidence High

Genome context

chr25: 33139075-33139200 [+]

Mature dre-miR-190a-5p

• Accession: MIMAT0001854
• Description: Danio rerio dre-miR-190a-5p mature miRNA
• Sequence: 46 - UGAUAUGUUUGAUAUAUUAGGUU - 68
• Evidence: not_experimental

Mature dre-miR-190a-3p

• Accession: MIMAT0052769
• Description: Danio rerio dre-miR-190a-3p mature miRNA
• Sequence: 82 - ACUAUAUAUCAAACAUAUUCCU - 103
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293