Stem-loop dre-mir-193a-1

Accession

MI0002029

Description

Danio rerio dre-mir-193a-1 precursor miRNA mir-193

Gene
family

RF01895; mir-193

Literature search

3 open access papers mention dre-mir-193a-1
(7 sentences)

Sequence

142 reads, 12 reads per million, 11 experiments

gacauuaauguguuagagguUGGGUCUUUGCGGGCAAGGUGAguaguuaaauuuacucucAACUGGCCUACAAAGUCCCAGUuucuggcucauguuauc
.......(((.(((((((((((((.(((((.((((.((.((((.(((.......))))))).)).)))).))))).))))))))))))).)))......

Structure

gacauua   u             U     C    A  G    u   ua 
       aug guuagagguUGGG CUUUG GGGC AG UGAg agu  a
       ||| ||||||||||||| ||||| |||| || |||| |||  a
       uac cggucuuUGACCC GAAAC UCCG UC Acuc uca  u
-cuauug   u             U     A    G  A    -   uu 

Annotation confidence High

Genome context

chr3: 35959912-35960010 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-193a-1

Mature dre-miR-193a-3p

• Accession: MIMAT0001856
• Description: Danio rerio dre-miR-193a-3p mature miRNA
• Sequence: 61 - AACUGGCCUACAAAGUCCCAGU - 82
• Evidence: experimental ; cloned [1]

Mature dre-miR-193a-5p

• Accession: MIMAT0031981
• Description: Danio rerio dre-miR-193a-5p mature miRNA
• Sequence: 21 - UGGGUCUUUGCGGGCAAGGUGA - 42
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293