miRBase entry: dre-mir-193b

Stem-loop dre-mir-193b

Accession

MI0002032

Description

Danio rerio dre-mir-193b precursor miRNA mir-193

Gene
family?

RF01895; mir-193

Literature search

2 open access papers mention dre-mir-193b
(5 sentences)

Sequence

3544 reads, 292 reads per million, 11 experiments

gugauuucagugaCGGGACUUUGGGGGCGAGAUGaguauugaucucuauccAACUGGCCCGCAAAGUCCCGCUucugggacucac
((((((((((...((((((((((.((((.((.((.(((........))).)).)).)))).))))))))))...)))))).))))

Structure

    -      uga          G    G  A  a   uug 
guga uuucag   CGGGACUUUG GGGC AG UG gua   a
|||| ||||||   |||||||||| |||| || || |||    
cacu aggguc   GCCCUGAAAC CCCG UC Ac uau   u
    c      uUC          G    G  A  c   cuc

Annotation confidence High

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Genome context

chr3: 43714699-43714783 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-193b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-193b-3p

Accession	MIMAT0001857
Description	Danio rerio dre-miR-193b-3p mature miRNA
Sequence	52 - AACUGGCCCGCAAAGUCCCGCU - 73
Evidence	experimental cloned [1]
Database links
Predicted targets

Mature dre-miR-193b-5p

Accession	MIMAT0031982
Description	Danio rerio dre-miR-193b-5p mature miRNA
Sequence	14 - CGGGACUUUGGGGGCGAGAUG - 34
Evidence	not_experimental
Database links

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293