Stem-loop dre-mir-204-2

Accession

MI0002042

Description

Danio rerio dre-mir-204-2 precursor miRNA mir-204

Gene
family

RF00646; mir-204

Literature search

4 open access papers mention dre-mir-204-2
(18 sentences)

Sequence

91350 reads, 5666 reads per million, 11 experiments

guguugcucuagugaccaguuugugaccuccuggguUUCCCUUUGUCAUCCUAUGCCUgcaguuccugaugagGCUGGGACAGCAAAGGGAGGUucagaugucgaccuguacuacagucaauac
((((((((.(((((..(((....((((.((.(((((((((((((((..(((((.((((.((........)))))))))))..))))))))))))))))).))))..)))))))).)).))))))

Structure

      -  c     ac   uuug    c  c               CA     U    g  guu 
guguug cu uagug  cag    ugac uc uggguUUCCCUUUGU  UCCUA GCCU ca   c
|||||| || |||||  |||    |||| || |||||||||||||||  ||||| |||| ||    
cauaac ga aucau  guc    gcug ag acuUGGAGGGAAACG  AGGGU CGga gu   c
      u  c     --   --ca    u  -               AC     -    -  agu 

Annotation confidence High

Genome context

chr7: 29336996-29337119 [-]

Mature dre-miR-204-5p

• Accession: MIMAT0001279
• Description: Danio rerio dre-miR-204-5p mature miRNA
• Sequence: 37 - UUCCCUUUGUCAUCCUAUGCCU - 58
• Evidence: experimental ; cloned [1]

Mature dre-miR-204-2-3p

• Accession: MIMAT0031987
• Description: Danio rerio dre-miR-204-2-3p mature miRNA
• Sequence: 74 - GCUGGGACAGCAAAGGGAGGU - 94
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293