Stem-loop dre-mir-216b

Accession

MI0002048

Description

Danio rerio dre-mir-216b precursor miRNA

Literature search

4 open access papers mention dre-mir-216b
(14 sentences)

Sequence

509403 reads, 600.0 reads per million, 246 experiments

acugacugggUAAUCUCUGCAGGCAACUGUGAugugauuacagucucACAUUGACCUGAAGAGGUUGagcagucugu
((.(((((..((((((((.(((((((.((((((((....)))...)))))))).)))).))))))))..))))).))

Structure

  u     gg        G    -   C     ---   g 
ac gacug  UAAUCUCU CAGG CAA UGUGA   ugu a
|| |||||  |||||||| |||| ||| |||||   |||  
ug cugac  GUUGGAGA GUCC GUU ACAcu   aca u
  u     ga        A    A   -     cug   u 

Annotation confidence High

Genome context

chr22: 28780257-28780333 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-216b

Mature dre-miR-216b-5p

• Accession: MIMAT0001867
• Description: Danio rerio dre-miR-216b-5p mature miRNA
• Sequence: 11 - UAAUCUCUGCAGGCAACUGUGA - 32
• Evidence: experimental ; cloned [1]

Mature dre-miR-216b-3p

• Accession: MIMAT0052774
• Description: Danio rerio dre-miR-216b-3p mature miRNA
• Sequence: 48 - ACAUUGACCUGAAGAGGUUG - 67
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293