Stem-loop dre-mir-218a-2

Accession

MI0002052

Description

Danio rerio dre-mir-218a-2 precursor miRNA mir-218

Gene
family

RF00255; mir-218

Literature search

7 open access papers mention dre-mir-218a-2
(145 sentences)

Sequence

849053 reads, 2007.0 reads per million, 273 experiments

gcgggguuuuccuUUGUGCUUGAUCUAACCAUGUGguugcagacucagacuaAUACAUGGUUCUGUCAAGCACcauggaaggucuugc
((((((((((((...(((((((((..((((((((((((.........))))...))))))))..)))))))))...))))))))))))

Structure

            uUU         CU        ---    gca 
gcgggguuuucc   GUGCUUGAU  AACCAUGU   Gguu   g
||||||||||||   |||||||||  ||||||||   ||||   a
cguucuggaagg   CACGAACUG  UUGGUACA   ucag   c
            uac         UC        UAa    acu 

Annotation confidence Medium

Genome context

chr1: 23866878-23866965 [+]

Mature dre-miR-218a-5p

• Accession: MIMAT0001868
• Description: Danio rerio dre-miR-218a-5p mature miRNA
• Sequence: 14 - UUGUGCUUGAUCUAACCAUGUG - 35
• Evidence: experimental ; cloned [1]

Mature dre-miR-218a-2-3p

• Accession: MIMAT0052776
• Description: Danio rerio dre-miR-218a-2-3p mature miRNA
• Sequence: 53 - AUACAUGGUUCUGUCAAGCAC - 73
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293