Stem-loop dre-mir-218b

Accession

MI0002053

Description

Danio rerio dre-mir-218b precursor miRNA mir-218

Gene
family

RF00255; mir-218

Literature search

6 open access papers mention dre-mir-218b
(80 sentences)

Sequence

325485 reads, 2009.0 reads per million, 274 experiments

caggacaccaUUGUGCUUGAUCUAACCAUGcaguucccuuucugucCAUGGUUGUGCCAAGCACUUUGgagacuug
((((.(.(((..(((((((...(((((((((((........)))..))))))))...)))))))..))).).))))

Structure

    a a   UU       AUC        --   uuc 
cagg c cca  GUGCUUG   UAACCAUG  cag   c
|||| | |||  |||||||   ||||||||  |||    
guuc g gGU  CACGAAC   GUUGGUAC  guc   c
    a a   UU       CGU        cu   uuu 

Annotation confidence High

Genome context

chr10: 17695265-17695340 [+]

Mature dre-miR-218b-5p

• Accession: MIMAT0001869
• Description: Danio rerio dre-miR-218b-5p mature miRNA
• Sequence: 11 - UUGUGCUUGAUCUAACCAUG - 30
• Evidence: experimental ; cloned [1]

Mature dre-miR-218b-3p

• Accession: MIMAT0052777
• Description: Danio rerio dre-miR-218b-3p mature miRNA
• Sequence: 47 - CAUGGUUGUGCCAAGCACUUUG - 68
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293