Stem-loop dre-mir-301a

Accession

MI0002059

Description

Danio rerio dre-mir-301a precursor miRNA

Literature search

18 open access papers mention dre-mir-301a
(23 sentences)

Sequence

545133 reads, 443.0 reads per million, 259 experiments

gcuguuaacagguGCUCUGACUUCAUUGCACUACUguauuggacagcuagCAGUGCAAUAGUAUUGUCAAAGCGucugagagcagc
((((((..((((((((.((((..(((((((((.((((........)).)).)))))))).)....)))).))))))))..))))))

Structure

      aa        C    --UU -        A  -  auu 
gcuguu  cagguGCU UGAC    C AUUGCACU CU gu   g
||||||  |||||||| ||||    | |||||||| || ||    
cgacga  gucuGCGA ACUG    G UAACGUGA ga cg   g
      ga        A    UUAU A        C  u  aca 

Annotation confidence High

Genome context

chr10: 33377001-33377086 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-301a

Mature dre-miR-301a-5p

• Accession: MIMAT0052778
• Description: Danio rerio dre-miR-301a-5p mature miRNA
• Sequence: 14 - GCUCUGACUUCAUUGCACUACU - 35
• Evidence: experimental ; cloned [1]

Mature dre-miR-301a-3p

• Accession: MIMAT0001870
• Description: Danio rerio dre-miR-301a-3p mature miRNA
• Sequence: 51 - CAGUGCAAUAGUAUUGUCAAAGCG - 74
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293