Stem-loop dre-mir-301c

Accession

MI0002062

Description

Danio rerio dre-mir-301c precursor miRNA

Literature search

1 open access papers mention dre-mir-301c
(1 sentences)

Sequence

1837 reads, 68 reads per million, 10 experiments

ugaggucagcuGCUCUGACGAUGUUGCACUACuguaccauccauucuagCAGUGCAAUAGUAUUGUCAUAGcauuuagccucu
.(((((.((.((((.(((((((((((((((.(((............))).))))))))...))))))).)))).)).))))).

Structure

u     c  c    C       ---        A   uacca 
 gaggu ag uGCU UGACGAU   GUUGCACU Cug     u
 ||||| || |||| |||||||   |||||||| |||      
 cuccg uu acGA ACUGUUA   UAACGUGA gau     c
u     a  u    U       UGA        C   cuuac 

Annotation confidence High

Genome context

chr10: 17454490-17454572 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-301c

Mature dre-miR-301c-3p

• Accession: MIMAT0001872
• Description: Danio rerio dre-miR-301c-3p mature miRNA
• Sequence: 50 - CAGUGCAAUAGUAUUGUCAUAG - 71
• Evidence: experimental ; cloned [1]

Mature dre-miR-301c-5p

• Accession: MIMAT0031991
• Description: Danio rerio dre-miR-301c-5p mature miRNA
• Sequence: 12 - GCUCUGACGAUGUUGCACUAC - 32
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293