Stem-loop dre-mir-338-1

Accession

MI0002063

Description

Danio rerio dre-mir-338-1 precursor miRNA mir-338

Gene
family

RF00686; mir-338

Literature search

4 open access papers mention dre-mir-338-1
(14 sentences)

Sequence

1534602 reads, 698.0 reads per million, 269 experiments

gguuucucccugcAACAAUCUCCUGAUGCUGCCUGAGUguuuuucuuccacUCCAGCAUCAGUGAUUUUGUUGCcggaggucacc
(((.(((((..(((((((..(((((((((((...(((((.........)))))))))))))).))..))))))).)))))..)))

Structure

   -u     cu       UC  -         CCU     uuu 
ggu  ucucc  gcAACAA  UC CUGAUGCUG   GAGUg   u
|||  |||||  |||||||  || |||||||||   |||||   u
cca  ggagg  CGUUGUU  AG GACUACGAC   CUcac   c
   cu     -c       UU  U         ---     cuu 

Annotation confidence High

Genome context

chr12: 35710521-35710605 [-]

Mature dre-miR-338-1-5p

• Accession: MIMAT0060897
• Description: Danio rerio dre-miR-338-1-5p mature miRNA
• Sequence: 14 - AACAAUCUCCUGAUGCUGCCUGAGU - 38
• Evidence: experimental ; cloned [1]

Mature dre-miR-338-3p

• Accession: MIMAT0048673
• Description: Danio rerio dre-miR-338-3p mature miRNA
• Sequence: 52 - UCCAGCAUCAGUGAUUUUGUUGC - 74
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293