Stem-loop dre-mir-375-1

Accession

MI0002072

Description

Danio rerio dre-mir-375-1 precursor miRNA mir-375

Gene
family

RF00700; mir-375

Literature search

9 open access papers mention dre-mir-375-1
(82 sentences)

Sequence

373607 reads, 556.0 reads per million, 266 experiments

ugcacuugcuuuACGUUGAGCCACACGCACAAUACauguggauucaguUUUGUUCGUUCGGCUCGCGUUAagcaagugca
(((((((((((.((((.(((((..(((.((((.((.((......)))).)))).)))..))))))))).)))))))))))

Structure

           u    U     AC   C    U  a  ug 
ugcacuugcuu ACGU GAGCC  ACG ACAA AC ug  g
||||||||||| |||| |||||  ||| |||| || ||   
acgugaacgaA UGCG CUCGG  UGC UGUU ug ac  a
           U    -     CU   U    U  -  uu 

Annotation confidence High

Genome context

chr6: 13800093-13800172 [-]

Mature dre-miR-375-1-5p

• Accession: MIMAT0060911
• Description: Danio rerio dre-miR-375-1-5p mature miRNA
• Sequence: 13 - ACGUUGAGCCACACGCACAAUAC - 35
• Evidence: experimental ; Illumina [1]

Mature dre-miR-375-3p

• Accession: MIMAT0001876
• Description: Danio rerio dre-miR-375-3p mature miRNA
• Sequence: 49 - UUUGUUCGUUCGGCUCGCGUUA - 70
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293