Stem-loop dre-mir-454b

Accession

MI0002076

Description

Danio rerio dre-mir-454b precursor miRNA mir-454

Gene
family

RF00746; mir-454

Literature search

2 open access papers mention dre-mir-454b
(3 sentences)

Sequence

2856256 reads, 2160.0 reads per million, 265 experiments

gauaaaugcaucuugcaggcgagaCCCUAUCAAUAUUGCCUCUGCUuuucucacuguuuauggagUAGUGCAAUAUUGCUUAUAGGGUcuugacuuuaaggcuaaucugcaauauc
((((..(((((((((.(((((((((((((((((((((((..(((((((.............))))))).)))))))))...))))))))))).))))))))......)))).))))

Structure

    aa    ------     c   -           ---         CU       ucuca 
gaua  ugca      ucuug agg cgagaCCCUAU   CAAUAUUGC  CUGCUuu     c
||||  ||||      ||||| ||| |||||||||||   |||||||||  |||||||     u
cuau  acgu      ggaau uuc guucUGGGAUA   GUUAUAACG  GAUgagg     g
    -a    cuaauc     -   a           UUC         -U       uauuu 

Annotation confidence High

Genome context

chr5: 13296307-13296422 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from dre-mir-454b

Mature dre-miR-454b-5p

• Accession: MIMAT0052782
• Description: Danio rerio dre-miR-454b-5p mature miRNA
• Sequence: 25 - CCCUAUCAAUAUUGCCUCUGCU - 46
• Evidence: experimental ; cloned [1]

Mature dre-miR-454b-3p

• Accession: MIMAT0001878
• Description: Danio rerio dre-miR-454b-3p mature miRNA
• Sequence: 66 - UAGUGCAAUAUUGCUUAUAGGGU - 88
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293