Stem-loop dre-mir-456

Accession

MI0002176

Description

Danio rerio dre-mir-456 precursor miRNA mir-456

Gene
family

RF00878; mir-456

Literature search

2 open access papers mention dre-mir-456
(7 sentences)

Sequence

473343 reads, 367.0 reads per million, 272 experiments

gcugguuguguguGCAGGCAUCUUUCCAGUCUACAuguggauccaggagucugCAGGCUGGUUAGAUGGUUGUCAcguacccagc
(((((.((((((.((((.(((((..(((((((....((((((......)))))))))))))..))))).)))))))))).)))))

Structure

     u      u    G     UU       ACAu      cc 
gcugg ugugug GCAG CAUCU  CCAGUCU    guggau  a
||||| |||||| |||| |||||  |||||||    ||||||   
cgacc augcAC UGUU GUAGA  GGUCGGA    Cgucug  g
     c      -    G     UU       ----      ag 

Annotation confidence High

Genome context

chr17: 22827063-22827147 [+]

Mature dre-miR-456-5p

• Accession: MIMAT0052783
• Description: Danio rerio dre-miR-456-5p mature miRNA
• Sequence: 14 - GCAGGCAUCUUUCCAGUCUACA - 35
• Evidence: experimental ; cloned [1]

Mature dre-miR-456-3p

• Accession: MIMAT0001882
• Description: Danio rerio dre-miR-456-3p mature miRNA
• Sequence: 54 - CAGGCUGGUUAGAUGGUUGUCA - 75
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293