miRBase entry: dre-mir-457a

Stem-loop dre-mir-457a

Accession

MI0002177

Description

Danio rerio dre-mir-457a precursor miRNA mir-15

Gene
family?

RF00455; mir-15

Literature search

2 open access papers mention dre-mir-457a
(4 sentences)

Sequence

7507 reads, 705 reads per million, 11 experiments

ugccugacagAAGCAGCACAUCAAUAUUGGCAgcugcccucucucuggguugccaguaugguuugugcugcucccgucagaca
...(((((.(.(((((((((...(((((((((...((((.......)))))))))))))....))))))))).).)))))...

Structure

ugc     a A         -UCA         gcu    uc 
   cugac g AGCAGCACA    AUAUUGGCA   gccc  u
   ||||| | |||||||||    |||||||||   ||||  c
   gacug c ucgucgugu    uaugaccgu   uggg  u
aca     c c         uugg         ---    uc

Annotation confidence High

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Genome context

chr7: 26071426-26071508 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-457a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-457a

Accession	MIMAT0001883
Description	Danio rerio dre-miR-457a mature miRNA
Sequence	11 - AAGCAGCACAUCAAUAUUGGCA - 32
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293