Stem-loop ptc-MIR156a

Accession

MI0002184

Description

Populus trichocarpa ptc-MIR156a precursor miRNA

Literature search

11 open access papers mention ptc-MIR156a
(90 sentences)

Sequence

29535 reads, 480.0 reads per million, 9 experiments

aaagaaagacUGACAGAAGAGAGUGAGCACAcacgaaaguauaugguaugaaggcauuccauugcagggugugUGCUCACAUCUCUUCUGUCAGCUuccac
...(.(((.(((((((((((((((((((((((((....(((.((((.(((....))).)))))))...)))))))))))).)))))))))))))))).)..

Structure

aaa a   a             -            gaaa   u    u   a 
   g aag cUGACAGAAGAGA GUGAGCACAcac    gua augg aug a
   | ||| ||||||||||||| ||||||||||||    ||| |||| |||  
   c uUC GACUGUCUUCUCU CACUCGUgugug    cgu uacc uac g
-ca c   -             A            -gga   -    u   g 

Annotation confidence High

Genome context

CM000342.2: 19089414-19089514 [-]

Mature ptc-miR156a-5p

• Accession: MIMAT0001890
• Description: Populus trichocarpa ptc-miR156a-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCACA - 31
• Evidence: not_experimental

Mature ptc-miR156a-3p

• Accession: MIMAT0055560
• Description: Populus trichocarpa ptc-miR156a-3p mature miRNA
• Sequence: 74 - UGCUCACAUCUCUUCUGUCAGCU - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604