Stem-loop ptc-MIR156c

Accession

MI0002186

Description

Populus trichocarpa ptc-MIR156c precursor miRNA

Literature search

10 open access papers mention ptc-MIR156c
(80 sentences)

Sequence

29532 reads, 480.0 reads per million, 9 experiments

cauuagaaacUGACAGAAGAGAGUGAGCACAcagaggcauauuuguauaaaucuauaccauugcuuuugcguGCUCACUUCUCAUUCUGUCAGCUUccag
.....(((.(((((((((((((((((((((.((((((((.....(((((....)))))...)))))))).)))))))).)))).))))))))).)))...

Structure

cauua   a         -    -        A        uauuu     a 
     gaa cUGACAGAA GAGA GUGAGCAC cagaggca     guaua a
     ||| ||||||||| |||| |||||||| ||||||||     |||||  
     cUU GACUGUCUU CUCU CACUCGug guuuucgu     cauau u
--gac   C         A    U        c        --uac     c 

Annotation confidence High

Genome context

CM000342.2: 25766668-25766767 [+]

Mature ptc-miR156c-5p

• Accession: MIMAT0001892
• Description: Populus trichocarpa ptc-miR156c-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCACA - 31
• Evidence: not_experimental

Mature ptc-miR156c-3p

• Accession: MIMAT0055561
• Description: Populus trichocarpa ptc-miR156c-3p mature miRNA
• Sequence: 73 - GCUCACUUCUCAUUCUGUCAGCUU - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604