Stem-loop ptc-MIR156f

Accession

MI0002189

Description

Populus trichocarpa ptc-MIR156f precursor miRNA

Literature search

9 open access papers mention ptc-MIR156f
(77 sentences)

Sequence

29848 reads, 485.0 reads per million, 9 experiments

agagaaagacUGACAGAAGAGAGUGAGCACAcacgaaagcuaauuguaugaaagcauaccauugcagggugugUGCUCACUUCUCUUCUGUCAGCUuacau
.....(((.(((((((((((((((((((((((((....((.(((.(((((....))))).)))))...)))))))))))).))))))))))))))))....

Structure

agaga   a             -            gaaa  u   u     a 
     aag cUGACAGAAGAGA GUGAGCACAcac    gc aau guaug a
     ||| ||||||||||||| ||||||||||||    || ||| |||||  
     uUC GACUGUCUUCUCU CACUCGUgugug    cg uua cauac a
-uaca   -             U            -gga  -   c     g 

Annotation confidence High

Genome context

Unknown

Mature ptc-miR156f-5p

• Accession: MIMAT0001895
• Description: Populus trichocarpa ptc-miR156f-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCACA - 31
• Evidence: not_experimental

Mature ptc-miR156f-3p

• Accession: MIMAT0055563
• Description: Populus trichocarpa ptc-miR156f-3p mature miRNA
• Sequence: 74 - UGCUCACUUCUCUUCUGUCAGCU - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604