Stem-loop ptc-MIR156k

Accession

MI0002194

Description

Populus trichocarpa ptc-MIR156k precursor miRNA

Literature search

11 open access papers mention ptc-MIR156k
(79 sentences)

Sequence

17 reads, 1.0 reads per million, 5 experiments

uuaugcaugcUGACAGAAGAGAGGGAGCACAacccuguaauagcuaaagagagucuuugcuuuuguuggacugugcuuucucuucuucugucaccaaccaa
...((..((.(((((((((((((((((((((..((..(((.(((.(((((...)))))))).)))..))..))))))))))).)))))))))).))..)).

Structure

uua  ca  c          -           ac  ug   u   u     g 
   ug  ug UGACAGAAGA GAGGGAGCACA  cc  uaa agc aaaga  
   ||  || |||||||||| |||||||||||  ||  ||| ||| ||||| a
   ac  ac acugucuucu cucuuucgugu  gg  guu ucg uuucu  
--a  ca  c          u           ca  uu   u   -     g 

Annotation confidence Not enough data

Genome context

CM000347.2: 11956115-11956215 [-]

Mature ptc-miR156k-5p

• Accession: MIMAT0001900
• Description: Populus trichocarpa ptc-miR156k-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGGGAGCACA - 31
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604