Stem-loop ptc-MIR166i

Accession

MI0002226

Description

Populus trichocarpa ptc-MIR166i precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

6 open access papers mention ptc-MIR166i
(23 sentences)

Sequence

ugucuuuugaggggaauguuguuugguucaaggccuggccaccccaugucuuggaauuuaaaauaucauguccUCGGACCAGGCUUCAUUCCCCucaauuacu
......((((((((((((..((((((((((((((.(((.....))).)))))(((...............)))..)))))))))..)))))))))))).....

Structure

ugucuu            uu         -----------------------     c   c 
      uugaggggaaug  guuugguuc                       aaggc ugg c
      ||||||||||||  |||||||||                       ||||| ||| a
      aacuCCCCUUAC  CGGACCAGG                       uucug acc c
-ucauu            UU         CUccuguacuauaaaauuuaagg     u   c 

Annotation confidence Not enough data

Genome context

CM000348.2: 2466416-2466518 [-]

Mature ptc-miR166i

• Accession: MIMAT0001932
• Description: Populus trichocarpa ptc-miR166i mature miRNA
• Sequence: 74 - UCGGACCAGGCUUCAUUCCCC - 94
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604