Stem-loop ptc-MIR166i

Accession

MI0002226

Description

Populus trichocarpa ptc-MIR166i precursor miRNA

Literature search

6 open access papers mention ptc-MIR166i
(22 sentences)

Sequence

41707892 reads, 588161.0 reads per million, 9 experiments

ugucuuuugaggGGAAUGUUGUUUGGUUCAAGGccuggccaccccaugucuuggaauuuaaaauaucauguccUCGGACCAGGCUUCAUUCCCCucaauuacu
......((((((((((((..((((((((((((((.(((.....))).)))))(((...............)))..)))))))))..)))))))))))).....

Structure

ugucuu            UU         -----------------------     c   c 
      uugaggGGAAUG  GUUUGGUUC                       AAGGc ugg c
      ||||||||||||  |||||||||                       ||||| ||| a
      aacuCCCCUUAC  CGGACCAGG                       uucug acc c
-ucauu            UU         CUccuguacuauaaaauuuaagg     u   c 

Annotation confidence High

Genome context

CM000348.2: 2466416-2466518 [-]

Mature ptc-miR166i-5p

• Accession: MIMAT0055587
• Description: Populus trichocarpa ptc-miR166i-5p mature miRNA
• Sequence: 13 - GGAAUGUUGUUUGGUUCAAGG - 33
• Evidence: experimental ; unknown

Mature ptc-miR166i-3p

• Accession: MIMAT0001932
• Description: Populus trichocarpa ptc-miR166i-3p mature miRNA
• Sequence: 74 - UCGGACCAGGCUUCAUUCCCC - 94
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604