Stem-loop ptc-MIR166l

Accession

MI0002229

Description

Populus trichocarpa ptc-MIR166l precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

6 open access papers mention ptc-MIR166l
(23 sentences)

Sequence

uaacuuuuguggugaauguugucugguucaaggcauggccaccacaucucuuggugaauauauguccUCGGACCAGGCUUCAUUCCCCucaauuaau
......(((.((.(((((..(((((((((.(((((((..(((((.......)))))....)))).))).)))))))))..))))).)).))).....

Structure

uaacuu   u  u     uu         a   -    --gc     ca 
      uug gg gaaug  gucugguuc agg caug    cacca  u
      ||| || |||||  ||||||||| ||| ||||    |||||  c
      aac CC CUUAC  CGGACCAGG Ucc guau    guggu  u
-uaauu   u  C     UU         C   u    auaa     uc 

Annotation confidence Not enough data

Genome context

CM000351.2: 541777-541873 [-]

Mature ptc-miR166l

• Accession: MIMAT0001935
• Description: Populus trichocarpa ptc-miR166l mature miRNA
• Sequence: 68 - UCGGACCAGGCUUCAUUCCCC - 88
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604