Stem-loop ptc-MIR166m

Accession

MI0002230

Description

Populus trichocarpa ptc-MIR166m precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

6 open access papers mention ptc-MIR166m
(23 sentences)

Sequence

ugaggaugugggggaaugucgucugacucgagacaacagguaaacugaaggaauggccggaguuuaagaguucucUCGGACCAGGCUUCAUUCCCCucauccaca
...(((((.(((((((((..(((((..((((((.(((...((((((...((.....))..))))))...))).))))))..)))))..))))))))))))))...

Structure

uga     u         uc     ac      c   agg      gaa  a 
   ggaug gggggaaug  gucug  ucgaga aac   uaaacu   gg a
   ||||| |||||||||  |||||  |||||| |||   ||||||   || u
   ccuac uCCCCUUAC  CGGAC  GGCUcu uug   auuuga   cc g
aca     -         UU     CA      c   aga      -gg  g 

Annotation confidence Not enough data

Genome context

CM000351.2: 5751466-5751570 [-]

Mature ptc-miR166m

• Accession: MIMAT0001936
• Description: Populus trichocarpa ptc-miR166m mature miRNA
• Sequence: 76 - UCGGACCAGGCUUCAUUCCCC - 96
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604