Stem-loop ptc-MIR166m

Accession

MI0002230

Description

Populus trichocarpa ptc-MIR166m precursor miRNA

Literature search

6 open access papers mention ptc-MIR166m
(22 sentences)

Sequence

49455756 reads, 701627.0 reads per million, 9 experiments

ugaggauguggGGGAAUGUCGUCUGACUCGAGAcaacagguaaacugaaggaauggccggaguuuaagaguucucUCGGACCAGGCUUCAUUCCCCucauccaca
...(((((.(((((((((..(((((..((((((.(((...((((((...((.....))..))))))...))).))))))..)))))..))))))))))))))...

Structure

uga     u         UC     AC      c   agg      gaa  a 
   ggaug ggGGGAAUG  GUCUG  UCGAGA aac   uaaacu   gg a
   ||||| |||||||||  |||||  |||||| |||   ||||||   || u
   ccuac uCCCCUUAC  CGGAC  GGCUcu uug   auuuga   cc g
aca     -         UU     CA      c   aga      -gg  g 

Annotation confidence High

Genome context

CM000351.2: 5751466-5751570 [-]

Mature ptc-miR166m-5p

• Accession: MIMAT0055591
• Description: Populus trichocarpa ptc-miR166m-5p mature miRNA
• Sequence: 12 - GGGAAUGUCGUCUGACUCGAGA - 33
• Evidence: experimental ; unknown

Mature ptc-miR166m-3p

• Accession: MIMAT0001936
• Description: Populus trichocarpa ptc-miR166m-3p mature miRNA
• Sequence: 76 - UCGGACCAGGCUUCAUUCCCC - 96
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604