Stem-loop ptc-MIR166q

Accession

MI0002234

Description

Populus trichocarpa ptc-MIR166q precursor miRNA

Literature search

6 open access papers mention ptc-MIR166q
(22 sentences)

Sequence

30089700 reads, 433779.0 reads per million, 9 experiments

uuagguugagaGGAAUGUUGUCUGGCUCGAGGUcauugaggccaugauuauacagacauggcauuaccugaugacagccgagaaaauucaaagucuguguguaucuuguaccucgaugauucUCGGACCAGGCUUCAUUCCUUccaacaaa
....((((.((((((((..((((((.(((((((((((((((.((.((((((((((((..(((..............)))((......))...))))))))).))).))..))))))))).)))))).))))))..)))))))).))))...

Structure

uuag    a        UU      C      -         -c  u   -         -----------au   auuacc 
    guug gaGGAAUG  GUCUGG UCGAGG Ucauugagg  ca gau uauacagac             ggc      u
    |||| ||||||||  |||||| |||||| |||||||||  || ||| |||||||||             |||       
    caac UUCCUUAC  CGGACC GGCUcu aguagcucc  gu cua gugugucug             ccg      g
-aaa    c        UU      A      u         au  u   u         aaacuuaaaagag   acagua 

Annotation confidence High

Genome context

CM000343.2: 3116836-3116986 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR166q

Mature ptc-miR166q-5p

• Accession: MIMAT0055594
• Description: Populus trichocarpa ptc-miR166q-5p mature miRNA
• Sequence: 12 - GGAAUGUUGUCUGGCUCGAGGU - 33
• Evidence: experimental ; unknown

Mature ptc-miR166q-3p

• Accession: MIMAT0001940
• Description: Populus trichocarpa ptc-miR166q-3p mature miRNA
• Sequence: 123 - UCGGACCAGGCUUCAUUCCUU - 143
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604