Stem-loop ptc-MIR166q

Accession

MI0002234

Description

Populus trichocarpa ptc-MIR166q precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

6 open access papers mention ptc-MIR166q
(23 sentences)

Sequence

uuagguugagaggaauguugucuggcucgaggucauugaggccaugauuauacagacauggcauuaccugaugacagccgagaaaauucaaagucuguguguaucuuguaccucgaugauucUCGGACCAGGCUUCAUUCCUUccaacaaa
....((((.((((((((..((((((.(((((((((((((((.((.((((((((((((..(((..............)))((......))...))))))))).))).))..))))))))).)))))).))))))..)))))))).))))...

Structure

uuag    a        uu      c      -         -c  u   -         -----------au   auuacc 
    guug gaggaaug  gucugg ucgagg ucauugagg  ca gau uauacagac             ggc      u
    |||| ||||||||  |||||| |||||| |||||||||  || ||| |||||||||             |||       
    caac UUCCUUAC  CGGACC GGCUcu aguagcucc  gu cua gugugucug             ccg      g
-aaa    c        UU      A      u         au  u   u         aaacuuaaaagag   acagua 

Annotation confidence Not enough data

Genome context

CM000343.2: 3116836-3116986 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR166q

Mature ptc-miR166q

• Accession: MIMAT0001940
• Description: Populus trichocarpa ptc-miR166q mature miRNA
• Sequence: 123 - UCGGACCAGGCUUCAUUCCUU - 143
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604