Stem-loop ptc-MIR172a

Accession

MI0002287

Description

Populus trichocarpa ptc-MIR172a precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

8 open access papers mention ptc-MIR172a
(34 sentences)

Sequence

uuguuugcaggugcagcaucaucaagauucacauucaaauagauguaccgaagcuauacagcuauguagcuagcuagcaauguauaaucauuguaggugAGAAUCUUGAUGAUGCUGCAUcagccauaa
......((.((((((((((((((((((((((((((......))))).....(((((((......))))))).(((.((((((......)))))).)))..))))))))))))))))))))).)).....

Structure

uuguuu  a                     acauucaaauagauguaccgaagcuauacagcuauguagcua   a      ua 
      gc ggugcagcaucaucaagauuc                                          gcu gcaaug  u
      || |||||||||||||||||||||                                          ||| ||||||   
      cg cUACGUCGUAGUAGUUCUAAG                                          ugg uguuac  a
-aauac  a                     ----------------------------------------Ag   a      ua 

Annotation confidence Not enough data

Genome context

CM000344.2: 1941920-1942048 [+]

Mature ptc-miR172a

• Accession: MIMAT0001993
• Description: Populus trichocarpa ptc-miR172a mature miRNA
• Sequence: 100 - AGAAUCUUGAUGAUGCUGCAU - 120
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604