Stem-loop ptc-MIR172a

Accession

MI0002287

Description

Populus trichocarpa ptc-MIR172a precursor miRNA

Literature search

10 open access papers mention ptc-MIR172a
(39 sentences)

Sequence

4651 reads, 80.0 reads per million, 9 experiments

uuguuugcagguGCAGCAUCAUCAAGAUUCACauucaaauagauguaccgaagcuauacagcuauguagcuagcuagcaauguauaaucauuguaggugAGAAUCUUGAUGAUGCUGCAUcagccauaa
......((.((((((((((((((((((((((((((......))))).....(((((((......))))))).(((.((((((......)))))).)))..))))))))))))))))))))).)).....

Structure

uuguuu  a                     ------------------------------------------------------     ca 
      gc gguGCAGCAUCAUCAAGAUUC                                                      ACauu  a
      || |||||||||||||||||||||                                                      |||||   
      cg cUACGUCGUAGUAGUUCUAAG                                                      uguag  a
-aauac  a                     Aguggauguuacuaauauguaacgaucgaucgauguaucgacauaucgaagcca     au 

Annotation confidence High

Genome context

CM000344.2: 1941920-1942048 [+]

Mature ptc-miR172a-5p

• Accession: MIMAT0055616
• Description: Populus trichocarpa ptc-miR172a-5p mature miRNA
• Sequence: 13 - GCAGCAUCAUCAAGAUUCAC - 32
• Evidence: experimental ; unknown

Mature ptc-miR172a-3p

• Accession: MIMAT0001993
• Description: Populus trichocarpa ptc-miR172a-3p mature miRNA
• Sequence: 100 - AGAAUCUUGAUGAUGCUGCAU - 120
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604