Stem-loop ptc-MIR172c

Accession

MI0002289

Description

Populus trichocarpa ptc-MIR172c precursor miRNA

Literature search

9 open access papers mention ptc-MIR172c
(37 sentences)

Sequence

4657 reads, 80.0 reads per million, 9 experiments

uuguuugcagguGCAGCAUCAUCAAGAUUCACauucaaacagauguacggcagcuagcuagcuagauagauagacagcaauguauuucuuugaaggugAGAAUCUUGAUGAUGCUGCAUcagccauaa
......((.(((((((((((((((((((((((.(((((..(((.(((((...(((..(((.((....)).)))..)))..))))).)))))))).))))..))))))))))))))))))).)).....

Structure

uuguuu  a                   --    a     ac   u     gca   ag   g  a 
      gc gguGCAGCAUCAUCAAGAU  UCAC uucaa  aga guacg   gcu  cua cu g
      || |||||||||||||||||||  |||| |||||  ||| |||||   |||  ||| ||  
      cg cUACGUCGUAGUAGUUCUA  Agug aaguu  ucu uaugu   cga  gau ga a
-aauac  a                   AG    g     --   u     -aa   ca   a  u 

Annotation confidence High

Genome context

CM000346.2: 19900042-19900169 [-]

Mature ptc-miR172c-5p

• Accession: MIMAT0055617
• Description: Populus trichocarpa ptc-miR172c-5p mature miRNA
• Sequence: 13 - GCAGCAUCAUCAAGAUUCAC - 32
• Evidence: experimental ; unknown

Mature ptc-miR172c-3p

• Accession: MIMAT0001995
• Description: Populus trichocarpa ptc-miR172c-3p mature miRNA
• Sequence: 99 - AGAAUCUUGAUGAUGCUGCAU - 119
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604