Stem-loop ptc-MIR172c

Accession

MI0002289

Description

Populus trichocarpa ptc-MIR172c precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

8 open access papers mention ptc-MIR172c
(35 sentences)

Sequence

uuguuugcaggugcagcaucaucaagauucacauucaaacagauguacggcagcuagcuagcuagauagauagacagcaauguauuucuuugaaggugAGAAUCUUGAUGAUGCUGCAUcagccauaa
......((.(((((((((((((((((((((((.(((((..(((.(((((...(((..(((.((....)).)))..)))..))))).)))))))).))))..))))))))))))))))))).)).....

Structure

uuguuu  a                   --    a     ac   u     gca   ag   g  a 
      gc ggugcagcaucaucaagau  ucac uucaa  aga guacg   gcu  cua cu g
      || |||||||||||||||||||  |||| |||||  ||| |||||   |||  ||| ||  
      cg cUACGUCGUAGUAGUUCUA  Agug aaguu  ucu uaugu   cga  gau ga a
-aauac  a                   AG    g     --   u     -aa   ca   a  u 

Annotation confidence Not enough data

Genome context

CM000346.2: 19900042-19900169 [-]

Mature ptc-miR172c

• Accession: MIMAT0001995
• Description: Populus trichocarpa ptc-miR172c mature miRNA
• Sequence: 99 - AGAAUCUUGAUGAUGCUGCAU - 119
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604