Stem-loop ptc-MIR172i

Accession

MI0002295

Description

Populus trichocarpa ptc-MIR172i precursor miRNA

Literature search

8 open access papers mention ptc-MIR172i
(33 sentences)

Sequence

auguggugaaggcagcaagucgcggguuguuguuggcgaaaugguucuguugguugaauggaagaguagcugaaggaacaguuuuggucgaagaagAGAAUCCUGAUGAUGCUGCAAcacagagc
.((((......((((((.((((.(((((.((.((((((((((.(((((.(((((((..........))))))).))))).))))).)))))....)).)))))))))..))))))..))))....

Structure

---a    gugaag      -a    c     g  ---g     -     g     g       aaug 
    ugug      gcagca  gucg ggguu uu    uuggc gaaau guucu uugguug    g
    ||||      ||||||  |||| ||||| ||    ||||| ||||| ||||| |||||||     
    acac      CGUCGU  UAGU CCUAA Ag    agcug uuuug caagg agucgau    a
cgag    ----AA      AG    -     G  aaga     g     a     a       gaga 

Annotation confidence Not enough data

Genome context

CM000344.2: 2531029-2531153 [+]

Mature ptc-miR172i

• Accession: MIMAT0002001
• Description: Populus trichocarpa ptc-miR172i mature miRNA
• Sequence: 97 - AGAAUCCUGAUGAUGCUGCAA - 117
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604