Stem-loop ptc-MIR403b

Accession

MI0002351

Description

Populus trichocarpa ptc-MIR403b precursor miRNA

Literature search

1 open access papers mention ptc-MIR403b
(1 sentences)

Sequence

293716 reads, 4925.0 reads per million, 9 experiments

acucauaucucuagUUUGUUCGUGGAUCUGACGCCaucacaaccguucauuucacgaccauccaauggcgUUAGAUUCACGCACAAACUCGcgaucuguc
...((.(((.(.(((((((.(((((((((((((((((.......(((........)))......))))))))))))))))).))))))).).))).))..

Structure

acu  u   u u       U                 cacaacc   cau 
   ca auc c agUUUGU CGUGGAUCUGACGCCau       guu   u
   || ||| | ||||||| |||||||||||||||||       |||    
   gu uag G UCAAACA GCACUUAGAUUgcggua       cag   u
-cu  c   c C       C                 -accuac   cac 

Annotation confidence High

Genome context

CM000346.2: 14828054-14828153 [-]

Mature ptc-miR403b-5p

• Accession: MIMAT0055644
• Description: Populus trichocarpa ptc-miR403b-5p mature miRNA
• Sequence: 15 - UUUGUUCGUGGAUCUGACGCC - 35
• Evidence: experimental ; unknown

Mature ptc-miR403b-3p

• Accession: MIMAT0002057
• Description: Populus trichocarpa ptc-miR403b-3p mature miRNA
• Sequence: 71 - UUAGAUUCACGCACAAACUCG - 91
• Evidence: not_experimental

References

1. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604