Stem-loop ssc-mir-135-1

Accession

MI0002415

Description

Sus scrofa ssc-mir-135-1 precursor miRNA

Literature search

3 open access papers mention ssc-mir-135-1
(11 sentences)

Sequence

33268 reads, 88.0 reads per million, 156 experiments

aggccucgcuguucucUAUGGCUUUUUAUUCCUAUGUGAuucuacugcucauucAUAUAGGGAUUGGAGCCGUGGCgcacggcggggaca
...(((((((((.(.((((((((((..((((((((((((.............)))))))))))).)))))))))).).)))))))))...

Structure

agg         u u          UU            uucua 
   ccucgcugu c cUAUGGCUUU  AUUCCUAUGUGA     c
   ||||||||| | ||||||||||  ||||||||||||     u
   ggggcggca g GGUGCCGAGG  UAGGGAUAUAcu     g
aca         c C          -U            uacuc 

Annotation confidence High

Genome context

chr13: 37564051-37564140 [+]

Mature ssc-miR-135-5p

• Accession: MIMAT0002121
• Description: Sus scrofa ssc-miR-135-5p mature miRNA
• Sequence: 17 - UAUGGCUUUUUAUUCCUAUGUGA - 39
• Evidence: experimental ; Illumina [2]

Mature ssc-miR-135-1-3p

• Accession: MIMAT0052548
• Description: Sus scrofa ssc-miR-135-1-3p mature miRNA
• Sequence: 55 - AUAUAGGGAUUGGAGCCGUGGC - 76
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328