Accession
MI0002424
Description
Sus scrofa
ssc-mir-216-1 precursor miRNA
Literature search
4 open access papers mention ssc-mir-216-1
(6 sentences)
(6 sentences)
Sequence
26856
reads,
24.0
reads per million, 123 experiments
gauggcugugaguuggcuUAAUCUCAGCUGGCAACUGUGAGauguucauacaauccccCACAGUGGUCUCUGGGAUUAUGcuaaacagagcaauuuccuugcccu
....(((.((..(((((.(((((((((..(((.((((((.(((((....)).)))...)))))).))).))))))))).))))).)).)))..............
....(((.((..(((((.(((((((((..(((.((((((.(((((....)).)))...)))))).))).))))))))).))))).)).)))..............
Structure
----------gaug g ag u CU A --A - u
gcu ug uuggc UAAUCUCAG GGC ACUGUG Gau gu c
||| || ||||| ||||||||| ||| |||||| ||| ||
cga ac aaucG AUUAGGGUC CUG UGACAC cua ca a
ucccguuccuuuaa g -a U -U G ccc a u
Annotation confidence
High
Do you think this miRNA is real?
Genome context
chr3: 90058975-90059079 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-216-1
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ssc-miR-216-5p
| Accession | MIMAT0002130 |
| Description | Sus scrofa ssc-miR-216-5p mature miRNA |
| Sequence | 19 - UAAUCUCAGCUGGCAACUGUGAG - 41 |
| Evidence |
experimental
Illumina [1] |
Mature ssc-miR-216-3p
| Accession | MIMAT0052555 |
| Description | Sus scrofa ssc-miR-216-3p mature miRNA |
| Sequence | 59 - CACAGUGGUCUCUGGGAUUAUG - 80 |
| Evidence |
experimental
Illumina [1] |
References
|
