Accession
MI0002425
Description
Sus scrofa
ssc-mir-217-1 precursor miRNA
Literature search
3 open access papers mention ssc-mir-217-1
(9 sentences)
(9 sentences)
Sequence
6941
reads,
12.0
reads per million, 145 experiments
auaauuauuacagaguuuuugaugucgcagaUACUGCAUCAGGAACUGAUUGGAUaagaauuggucaccAUCAGUUCUUAAUGCAUUGCCUUcagcaucuaaacaag
..............((((..(((((.(.((.((.(((((.((((((((((.((((........))).).)))))))))).))))).)).)).).))))).))))...
..............((((..(((((.(.((.((.(((((.((((((((((.((((........))).).)))))))))).))))).)).)).).))))).))))...
Structure
auaauuauuacaga uu c c a C C U - aag
guuu gaugu g ag UA UGCAU AGGAACUGAU G GAU a
|||| ||||| | || || ||||| |||||||||| | |||
caaa cuacg c UC GU ACGUA UUCUUGACUA c cug a
-----------gaa -u a U C U A c a guu
Annotation confidence
High
Do you think this miRNA is real?
Genome context
chr3: 90065707-90065813 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-217-1
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ssc-miR-217-5p
| Accession | MIMAT0002131 |
| Description | Sus scrofa ssc-miR-217-5p mature miRNA |
| Sequence | 32 - UACUGCAUCAGGAACUGAUUGGAU - 55 |
| Evidence |
experimental
Illumina [1] |
Mature ssc-miR-217-3p
| Accession | MIMAT0052556 |
| Description | Sus scrofa ssc-miR-217-3p mature miRNA |
| Sequence | 70 - AUCAGUUCUUAAUGCAUUGCCUU - 92 |
| Evidence |
experimental
Illumina [1] |
References
|
