miRBase entry: ssc-mir-217-1

Stem-loop ssc-mir-217-1


Accession
MI0002425
Description
Sus scrofa ssc-mir-217-1 precursor miRNA

Literature search
3 open access papers mention ssc-mir-217-1
(10 sentences)

Sequence

17 reads, 39 reads per million, 9 experiments
auaauuauuacagaguuuuugaugucgcagaUACUGCAUCAGGAACUGAUUGGAUaagaauuggucaccaucaguucuuaaugcauugccuucagcaucuaaacaag
..............((((..(((((.(.((.((.(((((.((((((((((.((((........))).).)))))))))).))))).)).)).).))))).))))...

Structure
auaauuauuacaga    uu     c c  a  C     C          U -   aag 
              guuu  gaugu g ag UA UGCAU AGGAACUGAU G GAU   a
              ||||  ||||| | || || ||||| |||||||||| | |||    
              caaa  cuacg c uc gu acgua uucuugacua c cug   a
-----------gaa    -u     a u  c  u     a          c a   guu 


Annotation confidence Not enough data
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Genome context
chr3: 90065707-90065813 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-217-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-217

Accession MIMAT0002131
Description Sus scrofa ssc-miR-217 mature miRNA
Sequence 32 - UACUGCAUCAGGAACUGAUUGGAU - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19196471
    Cloning, characterization and expression analysis of porcine microRNAs
    Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
    BMC Genomics (2009) 10:65

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328