Stem-loop ssc-mir-224

Accession

MI0002426

Description

Sus scrofa ssc-mir-224 precursor miRNA

Literature search

19 open access papers mention ssc-mir-224
(28 sentences)

Sequence

6954 reads, 34.0 reads per million, 134 experiments

gggcuuuCAAGUCACUAGUGGUUCCGUUUAguagaagguuuugcauuguuucaAAAUGGUGCCCUAGUGACUACAAagccc
(((((((..(((((((((.(((.((((((.(((((....))))).........)))))).))))))))))))..)))))))

Structure

       CA         U   U      --------A     a 
gggcuuu  AGUCACUAG GGU CCGUUU         guaga g
|||||||  ||||||||| ||| ||||||         |||||  
cccgaAA  UCAGUGAUC CCG GGUAAA         cguuu g
       CA         -   U      acuuuguua     u 

Annotation confidence High

Genome context

chrX: 140860060-140860140 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-224

Mature ssc-miR-224-5p

• Accession: MIMAT0002132
• Description: Sus scrofa ssc-miR-224-5p mature miRNA
• Sequence: 8 - CAAGUCACUAGUGGUUCCGUUUA - 30
• Evidence: not_experimental

Mature ssc-miR-224-3p

• Accession: MIMAT0052557
• Description: Sus scrofa ssc-miR-224-3p mature miRNA
• Sequence: 54 - AAAUGGUGCCCUAGUGACUACAA - 76
• Evidence: not_experimental

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70