Stem-loop ssc-mir-95

Accession

MI0002436

Description

Sus scrofa ssc-mir-95 precursor miRNA

Literature search

3 open access papers mention ssc-mir-95
(81 sentences)

Sequence

144007 reads, 315.0 reads per million, 207 experiments

aacacagugggcgCUCAAUAAAUGUUUGUUGAAUUGagaugcguuaaaUUCAACGGGUAUUUAUUGAGCAcccacucugug
.(((.((((((.(((((((((((((((((((((((...........))))))))))))))))))))))).)))))).))).

Structure

a   c      c                       Gaga 
 aca aguggg gCUCAAUAAAUGUUUGUUGAAUU    u
 ||| |||||| |||||||||||||||||||||||    g
 ugu ucaccc CGAGUUAUUUAUGGGCAACUUaa    c
g   c      A                       auug 

Annotation confidence Medium

Genome context

chr8: 4277238-4277318 [+]

Mature ssc-miR-95-5p

• Accession: MIMAT0052566
• Description: Sus scrofa ssc-miR-95-5p mature miRNA
• Sequence: 14 - CUCAAUAAAUGUUUGUUGAAUUG - 36
• Evidence: experimental ; Illumina [2-3]

Mature ssc-miR-95-3p

• Accession: MIMAT0002142
• Description: Sus scrofa ssc-miR-95-3p mature miRNA
• Sequence: 49 - UUCAACGGGUAUUUAUUGAGCA - 70
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328