Stem-loop ssc-mir-181c

Accession

MI0002438

Description

Sus scrofa ssc-mir-181c precursor miRNA

Literature search

28 open access papers mention ssc-mir-181c
(74 sentences)

Sequence

624035 reads, 401.0 reads per million, 214 experiments

caaggguuugggggAACAUUCAACCUGUCGGUGAGUuugggcagcucaggcaaACCAUCGACCGUUGAGUGGACCccgaggccugga
...((((((.((((..((((((((..(((((((.(((((...........)))))))))))).))))))))..)))).))))))...

Structure

caa      g    AA        CU       A     ggca 
   ggguuu gggg  CAUUCAAC  GUCGGUG GUuug    g
   |||||| ||||  ||||||||  ||||||| |||||    c
   uccgga ccCC  GUGAGUUG  CAGCUAC CAaac    u
agg      g    AG        -C       -     ggac 

Annotation confidence High

Genome context

chr2: 65553664-65553750 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-181c

Mature ssc-miR-181c-5p

• Accession: MIMAT0002144
• Description: Sus scrofa ssc-miR-181c-5p mature miRNA
• Sequence: 15 - AACAUUCAACCUGUCGGUGAGU - 36
• Evidence: experimental ; Illumina [2-4]

Mature ssc-miR-181c-3p

• Accession: MIMAT0052567
• Description: Sus scrofa ssc-miR-181c-3p mature miRNA
• Sequence: 54 - ACCAUCGACCGUUGAGUGGACC - 75
• Evidence: experimental ; Illumina [2-4]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100