Stem-loop ssc-let-7c

Accession

MI0002445

Description

Sus scrofa ssc-let-7c precursor miRNA

Literature search

42 open access papers mention ssc-let-7c
(149 sentences)

Sequence

1007 reads, 389 reads per million, 15 experiments

ugugugcauccggguUGAGGUAGUAGGUUGUAUGGUUuagaguuacaccgugggaguuaacuguacaaccuucuagcuuuccuuggagcacacu
.((((((.((((((..(((.(((.(((((((((((((.....((((...)))).....))))))))))))).))).)))..)))))))))))).

Structure

u      a      uU   G   U             uagag    a 
 gugugc uccggg  GAG UAG AGGUUGUAUGGUU     uuac  
 |||||| ||||||  ||| ||| |||||||||||||     |||| c
 cacacg agguuc  uuc auc uccaacaugucaa     ggug  
u      -      cu   g   u             uugag    c 

Annotation confidence Not enough data

Genome context

chr13: 191559336-191559429 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-let-7c

Mature ssc-let-7c

• Accession: MIMAT0002151
• Description: Sus scrofa ssc-let-7c mature miRNA
• Sequence: 16 - UGAGGUAGUAGGUUGUAUGGUU - 37
• Evidence: experimental ; 454 [2], Illumina [3,5-6], cloned [4]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 19196471
   Cloning, characterization and expression analysis of porcine microRNAs
   Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
   BMC Genomics (2009) 10:65


3. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


4. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


5. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


6. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100