Stem-loop ssc-let-7i

Accession

MI0002447

Description

Sus scrofa ssc-let-7i precursor miRNA

Literature search

42 open access papers mention ssc-let-7i
(130 sentences)

Sequence

3429 reads, 678 reads per million, 15 experiments

cuggcUGAGGUAGUAGUUUGUGCUguuggucggguugugacauugcccgcuguggagauaaCUGCGCAAGCUACUGCCUUGCUag
(((((.(((((((((((((((((.(((((.(((((.........)))))))........))).))))))))))))))))))))))

Structure

     U                 U   --------  u     ugu 
cuggc GAGGUAGUAGUUUGUGC guu        gg cgggu   g
||||| ||||||||||||||||| |||        || |||||   a
gaUCG UUCCGUCAUCGAACGCG Caa        uc gcccg   c
     -                 U   uagaggug  -     uua 

Annotation confidence Not enough data

Genome context

chr5: 30021224-30021308 [+]

Mature ssc-let-7i-5p

• Accession: MIMAT0002153
• Description: Sus scrofa ssc-let-7i-5p mature miRNA
• Sequence: 6 - UGAGGUAGUAGUUUGUGCU - 24
• Evidence: experimental ; cloned [2], Illumina [3-4]

Mature ssc-let-7i-3p

• Accession: MIMAT0037319
• Description: Sus scrofa ssc-let-7i-3p mature miRNA
• Sequence: 62 - CUGCGCAAGCUACUGCCUUGCU - 83
• Evidence: experimental ; Illumina [5]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100


5. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252